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KMID : 1137820210420050232
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의공학회지
2021 Volume.42 No. 5 p.232 ~ p.240
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Hybrid Learning-Based Cell Morphology Profiling Framework for Classifying Cancer Heterogeneity
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Min Chan-Hong
Jeong Hyun-Tae
Yang Se-Jung
Shin Jennifer Hyun-Jong
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Abstract
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Heterogeneity in cancer is the major obstacle for precision medicine and has become a critical issue in the field of a cancer diagnosis. Many attempts were made to disentangle the complexity by molecular clas- sification. However, multi-dimensional information from dynamic responses of cancer poses fundamental limita- tions on biomolecular marker-based conventional approaches. Cell morphology, which reflects the physiological state of the cell, can be used to track the temporal behavior of cancer cells conveniently. Here, we first present a hybrid learning-based platform that extracts cell morphology in a time-dependent manner using a deep con- volutional neural network to incorporate multivariate data. Feature selection from more than 200 morphological features is conducted, which filters out less significant variables to enhance interpretation. Our platform then per- forms unsupervised clustering to unveil dynamic behavior patterns hidden from a high-dimensional dataset. As a result, we visualize morphology state-space by two-dimensional embedding as well as representative morphology clusters and trajectories. This cell morphology profiling strategy by hybrid learning enables simplification of the heterogeneous population of cancer.
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KEYWORD
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Hybrid learning, Deep convolutional neural network, Unsupervised clustering, Cell morphology, Cancer heterogeneity
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